Methods for selecting competent oocytes and competent embryos with high potential for pregnancy outcome

ABSTRACT

The present invention relates to a method for selecting a competent oocyte or a competent embryo by determining the expression level of specific microRNA species in a body fluid or in cumulus cells.

CROSS-REFERENCE TO RELATED APPLICATIONS

This application is a continuation of U.S. Ser. No. 14/808,204 filedJul. 24, 2015, now abandoned, which was a continuation of U.S. Ser. No.13/989,423 filed Aug. 6, 2013, now U.S. Pat. No. 9,121,066, which itselfwas a national stage filing under Rule 371 of PCT/EP2011/070990 filedNov. 24, 2011 which claimed priority to European Application 10306293.1filed Nov. 24, 2010.

FIELD OF THE INVENTION

The present invention relates to a method for selecting a competentoocyte or a competent embryo.

BACKGROUND OF THE INVENTION

In assisted reproductive technology (ART), pregnancy and birth ratesfollowing in vitro fertilization (IVF) attempts remain low. Indeed, 2out of 3 IVF cycles fail to result in pregnancy (SART 2004) and morethan 8 out of 10 transferred embryos fail to implant (Kovalevsky andPatrizio, 2005). In addition, more than 50% of IVF-born babies are frommultiple gestations (Reddy et al., 2007). Preterm deliveries that resultfrom multiple pregnancies caused by ART are estimated to account forapproximately $890 million of U.S. health care costs annually (Bromerand Seli, 2008).

The selection of embryos with higher implantation potential has been oneof the major challenges in ART. This selection is currently based onmorphological criteria such as growth rate, early cleavage on day-1,degree of fragmentation and blastocyst formation (Ebner et al., 2003).However, the predictive power of this approach is still limited. Withthe emergence of new technologies like ‘omics’, there are new biomarkersas discovery tools that can be applied to IVF for oocyte and/or embryoselection (Hillier, 2008).

Legal and ethical considerations make biomarkers directly directed tooocytes or embryos difficult to implement. Thus, to avoid any invasivemethod, some studies have been focused on cumulus cells (CCs).

Indeed, transcriptomic approaches using microarray technology, allowingthe simultaneous screening of thousands of genes, were intensively usedto identify in CCs the biomarkers related to oocyte competence, which isdefined as the intrinsic ability of oocytes to undergo meioticmaturation, fertilization and embryonic development (McKenzie et al.,2004; van Montfoort et al., 2008).

Using the same approach, genes expressed in CCs used as biomarkersassociated with embryo quality (McKenzie et al., 2004; van Montfoort etal., 2008; Zhang et al., 2005) and pregnancy outcome (Assou et al.,2008; Hamel et al., 2008; Hamel et al., 2010; Assou et al. 2010) havealso been identified.

Even if these studies target the gene expression profile of CCs, asource of cells reflecting the biology and competence of both oocytesand embryos, there is a need to investigate further to develop anon-invasive method of predicting IVF outcome easier to use and withhigher reliability.

SUMMARY OF THE INVENTION

The present invention relates to a method for selecting an oocyte thatwill produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy, comprising a step of measuringin a cumulus cell surrounding said oocyte the expression level of atleast 5 microRNA selected from the group consisting of hsa-mir-103-1,hsa-mir-103-2, hsa-mir-1826, hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3,hsa-let-7b, hsa-let-7c, hsa-let-7f, hsa-mir-1244, hsa-mir-182,hsa-mir-21, hsa-mir-30a, hsa-mir-30d, hsa-mir-320a, hsa-mir-508,hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-1974,hsa-mir-146b, hsa-mir-886, hsa-mir-210, hsa-mir-1979, hsa-mir-125a, SEQID NO: 6, SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15,SEQ ID NO: 16, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO:20 and SEQ ID NO: 21.

The present invention also relates to a method for selecting an embryowith a high implantation rate leading to pregnancy comprising a step ofmeasuring in a cumulus cell surrounding said embryo the expression levelof at least 5 microRNA selected from the group consisting ofhsa-mir-103-1, hsa-mir-103-2, hsa-mir-1826, hsa-let-7a-1, hsa-let-7a-2,hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7f, hsa-mir-1244,hsa-mir-182, hsa-mir-21, hsa-mir-30a, hsa-mir-30d, hsa-mir-320a,hsa-mir-508, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-16-1, hsa-mir-16-2,hsa-mir-1974, hsa-mir-146b, hsa-mir-886, hsa-mir-210, hsa-mir-1979,hsa-mir-125a, SEQ ID NO: 6, SEQ ID NO: 7. SEQ ID NO: 8, SEQ ID NO: 9,SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO:14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ ID NO: 17, SEQ ID NO: 18, SEQ IDNO: 19, SEQ ID NO: 20 and SEQ ID NO: 21.

The method according to the invention may comprise a further step ofmeasuring in a cumulus cell surrounding said oocyte or said embryo theexpression level of one or more genes selected from the group consistingof ATF3, SIAT6, PRKACA, PLA2G5, GPC6, G0S2, RBMS1, NFIC, SLC40A1 andWNT6.

The present invention also relates to a method for selecting an oocytethat will produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy, or an embryo with a highimplantation rate leading to pregnancy, comprising a step of measuringin a bodily fluid the expression level of at least 5 microRNA selectedfrom the group consisting of hsa-mir-103-1, hsa-mir-103-2, hsa-mir-1826,hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c,hsa-let-7f, hsa-mir-1244, hsa-mir-182, hsa-mir-21, hsa-mir-30a,hsa-mir-30d, hsa-mir-320a, hsa-mir-508, hsa-mir-92a-1, hsa-mir-92a-2,hsa-mir-16-1, hsa-mir-16-2, hsa-mir-1974, hsa-mir-146b, hsa-mir-886,hsa-mir-210, hsa-mir-1979, hsa-mir-125a, SEQ ID NO: 6, SEQ ID NO: 7, SEQID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ ID NO: 17,SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO:22, SEQ ID NO: 23, SEQ ID NO:24 and SEQ ID NO: 25.

The present invention also relates to an isolated nucleic acid moleculehaving the nucleotide sequence as set forth in SEQ ID NO: 6, SEQ ID NO:7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO:12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ IDNO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO: 21, SEQID NO: 22, SEQ ID NO: 23, SEQ ID NO:24 and SEQ ID NO: 25.

DETAILED DESCRIPTION OF THE INVENTION Definitions

A used herein the term “competent oocyte” refers to a female gamete oregg that when fertilized, i. e. upon fertilization, produces a viableembryo with a high implantation rate leading to pregnancy.

According to the invention, the oocyte may result from a natural cycle,a modified natural cycle or a stimulated cycle for cIVF or ICSI. Theterm “natural cycle” refers to the natural cycle by which the female orwoman produces an oocyte. The term “modified natural cycle” refers tothe process by which, the female or woman produces an oocyte or twounder a mild ovarian stimulation with GnRH antagonists associated withrecombinant FSH or hMG. The term “stimulated cycle” refers to theprocess by which a female or a woman produces one ore more oocytes understimulation with GnRH agonists or antagonists associated withrecombinant FSH or hMG.

The term “cumulus cell” refers to a cell comprised in a mass of cellsthat surrounds an oocyte. These cells are believed to be involved inproviding an oocyte some of its nutritional, energy and or otherrequirements that are necessary to yield a viable embryo uponfertilization.

The term “embryo” refers to a fertilized oocyte or zygote. Saidfertilization may intervene under a classical in vitro fertilization(cIVF) or under an intracytoplasmic sperm injection (ICSI) protocol.

The term “classical in vitro fertilization” or “cIVF” refers to aprocess by which oocytes are fertilised by sperm outside of the body, invitro. IVF is a major treatment in infertility when in vivo conceptionhas failed.

The term “intracytoplasmic sperm injection” or “ICSI” refers to an invitro fertilization procedure in which a single sperm is injecteddirectly into an oocyte. This procedure is most commonly used toovercome male infertility factors, although it may also be used whereoocytes cannot easily be penetrated by sperm and occasionally as amethod of in vitro fertilization, especially that associated with spermdonation.

The term “competent embryo” refers to an embryo with a high implantationrate leading to pregnancy. The term “high implantation rate” means thepotential of the embryo when transferred in uterus, to be implanted inthe uterine environment and to give rise to a viable foetus, which inturn develops into a viable offspring absent a procedure or event thatterminates said pregnancy.

Set of Predictive microRNA

The inventors have identified a set of 42 predictive microRNA accordingto the invention expressed in cumulus cells and 4 predictive microRNAaccording to the invention expressed in oocyte.

MicroRNA are single-stranded RNA molecules that regulate the expressionof messenger mRNA and play important roles in many physiologicalprocesses including growth, differentiation, apoptosis, cell cycle anddevelopment (Bushati N, et al. 2007, microRNA functions. Annu Rev CellDev Biol 23:175-205). Mature microRNA negatively regulate geneexpression by targeting specific messenger mRNA for cleavage ortranslation repression. Growing body of evidence suggests that they areinvolved in the control of a wide range of physiological pathway (Bartelet al., 2009).It was discovered that some microRNAs circulate in bodily fluid.These circulating microRNA were found to be usefulness biomarker fordiagnosis, prognosis and therapeutics, in particular in cancerology(Kosaka N. et al., 2010).It was also been discovered than some miRNA can be transferred from acell to adjacent cells and induce targeted inhibition of proteinexpression in the acceptor cells (Katakowski M. et al. 2010)

Table I shows the set of predictive microRNA according to the invention.

Some microRNA of the invention are known. They are identified by theirname. All information concerning these microRNA, in particular theirsequence, can be found on http://www.mirbase.org.

Other microRNA are new. They are identified by their sequence and asequence identification number (SEQ ID NO) was allocated to eachsequences.

TABLE I set of predictive microRNA MicroRNAMicroRNA nucleotide sequence  name (only for new microRNA) SEQ ID NO: 6AGAAGGAACGUCUGGAGUUUGUGCUGGU hsa-mir-103 SEQ ID NO: 7GUUUAUUCUAGAGAGAAUUCUUACUC SEQ ID NO: 8 AGACUUUCGGCCUAGGAUC hsa-mir-1826SEQ ID NO: 9 AGGUUCUGUCGUAUCAAUC hsa-mir-508 hsa-mir-16 SEQ ID NO: 10CGAGCCGGGCCCUUCCGUC hsa-mir-182 hsa-let-7b hsa-let-7c hsa-let-7fhsa-let-7a SEQ ID NO: 11 CGGAAAGGAGGGAAAGGGC hsa-mir-21 SEQ ID NO: 12CGGGCGGAGAGUAGGCAUC hsa-mir-1826 hsa-mir-92a SEQ ID NO: 13GUGGAGCCGGGCGUGGACU SEQ ID NO: 14 CUCUUCGUCUGUCCCUAUC hsa-mir-30dhsa-mir-30a SEQ ID NO: 15 UCCAUCAAAGAUCGGCAUC SEQ ID NO: 16UGUGGGAAGAGGGCAUCCU SEQ ID NO: 17 AGGAGCAAGAGGGCAUCCU SEQ ID NO: 18GCGAGGCACUGUGGAGAUC SEQ ID NO: 19 AGGCAGGUGAAGGCAUCCU SEQ ID NO: 20UGGGAUCCCGAGGCAUCCU SEQ ID NO: 21 GCAGAUCUUCCUGGGUGGUGUGGACSEQ ID NO: 22 GGUAGUGUCGCGGGGGUGC  (found in oocyte) SEQ ID NO: 23AAGGACUGUGAUCAUUGAA  (found in oocyte) SEQ ID NO: 24AGCGACGUUUCAUUGAAAA  (found in oocyte) SEQ ID NO: 25GGGGGCUGUAUCAUUGACA  (found in oocyte) hsa-mir-1244 hsa-mir-320a

The inventors have investigated the interaction between these microRNAand mRNA from genes identified to be interesting biomarkers in formerstudies (McKenzie et al., 2004; van Montfoort et al., 2008; Zhang etal., 2005; Assou et al., 2008; Hamel et al., 2008; Hamel et al., 2010;Assou et al. 2010; WO2010/118991).

MicroRNA of the present invention were found to interact with:

-   -   genes whose overexpression is predictive of an oocyte that will        produce, upon fertilization, a viable embryo with a high        implantation rate leading to pregnancy or an embryo with a high        implantation rate leading to pregnancy (group A),    -   genes whose overexpression is predictive of a non competent        oocyte or embryo, the embryo being unable to implant (group B),    -   genes whose overexpression is predictive of a non competent        oocyte or embryo due to early embryo arrest (group C),    -   genes whose overexpression is inversely correlated with embryo        quality (group D),    -   genes whose overexpression is correlated with embryo quality        (group E).

Genes are known per se and are identified by their symbol. Moreinformation about these genes as sequences or name corresponding to thesymbol can be found on Targetscan (http://www.targetscan.org/) and MiRDB(http://mirdb.org/cai-bin/search.cgi).

Tables A, B, C, D and E show the microRNA contingent to genes with whichthey interact.

Some microRNA, as hsa-let7a or hsa-mir-182, interact with several genes.

Each table correspond to one group A, B, C, D and E corresponding tospecific oocyte or embryo qualities as capacity of an embryo to implantor to develop without arrest as described above.

TABLE A microRNA interacting with genes of group A Gene with which themicroRNA interacts MicroRNA name Gene symbol Gene name Gene IDhsa-mir-30d CAMTA1 calmodulin binding transcription activator 1 23261hsa-mir-30a CAMTA1 calmodulin binding transcription activator 1 23261SEQ ID NO: 15 PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 5105SEQ ID NO: 16 PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 5105SEQ ID NO: 17 PCK1 phosphoenolpyruvate carboxykinase 1 (soluble) 5105SEQ ID NO: 24 SLAMF6 SLAM family member 6 114836 (found in oocyte)

TABLE B microRNA interacting with genes of group B Gene with which themicroRNA interacts Gene Gene MicroRNA name symbol Gene name IDhsa-mir-182 EGR3 early growth response 3 1960 hsa-mir-508 FOSB FBJmurine osteosarcoma viral oncogene homolog B 2354 SEQ ID NO: 6 FOSB FBJmurine osteosarcoma viral oncogene homolog B 2354 hsa-let-7a GPC6glypican 6 10082 hsa-mir-103 GPC6 glypican 6 10082 SEQ ID NO: 7 GPC6′glypican 6 10082 SEQ ID NO: 8 GPC6 glypican 6 10082 hsa-mir-1826 PDE5Aphosphodiesterase 5A, cGMP-specific 8654 SEQ ID NO: 9 PDE5Aphosphodiesterase 5A, cGMP-specific 8654 hsa-mir-508 SLC40A1 solutecarrier family 40 (iron-regulated transporter), member 1 30061

TABLE C microRNA interacting with genes of group C Gene with which themicroRNA interacts Gene Gene MicroRNA name symbol Gene name IDhsa-mir-16 G0S2 G0/G1switch 2 50486 SEQ ID NO: 10 GRIK5 glutamatereceptor, ionotropic, kainate 5 2901 hsa-mir-182 IGF1R insulin-likegrowth factor 1 receptor 3480 hsa-mir-320a IGF1R insulin-like growthfactor 1 receptor 3480 hsa-let-7b IGF1R insulin-like growth factor 1receptor 3480 hsa-let-7c IGF1R insulin-like growth factor 1 receptor3480 hsa-let-7f IGF1R insulin-like growth factor 1 receptor 3480hsa-let-7a IGF1R insulin-like growth factor 1 receptor 3480 SEQ ID NO:11 IGF1R insulin-like growth factor 1 receptor 3480 hsa-mir-21 NFIBnuclear factor I/B 4781 hsa-mir-30d NFIB nuclear factor I/B 4781hsa-mir-30a NFIB nuclear factor I/B 4781 SEQ ID NO: 12 NFIC ′nuclearfactor I/C (CCAAT-binding transcription 4782 factor) SEQ ID NO: 22(found in NFIC ′nuclear factor I/C (CCAAT-binding transcription 4782oocyte) factor) hsa-mir-1826 RBMS1 RNA binding motif, single strandedinteracting 5937 protein 1

TABLE D MicroRNA interacting with genes of group D Gene with which themicroRNA interacts Gene MicroRNA name symbol Gene name Gene ID SEQ IDNO: 23 (found in FAT3 FAT tumor suppressor homolog 3 120114 oocyte)(Drosophila) hsa-mir-92a SOX4 SRY (sex determining region Y)-box 4 6659SEQ ID NO: 13 SOX4 ′SRY (sex determining region Y)-box 4 6659 SEQ ID NO:14 SOX4 ′SRY (sex determining region Y)-box 4 6659

TABLE E microRNA interacting with genes of group E Gene with which themicroRNA interacts Gene Gene MicroRNA name symbol Gene name ID SEQ IDNO: 20 (found EPOR erythropoietin receptor 2057 in oocyte) SEQ ID NO: 18LRCH4 leucine-rich repeats and calponin homology (CH) domain 4034containing SEQ ID NO: 19 NLRP1 NLR family, pyrin domain containing 122861 SEQ ID NO: 20 PAX8 paired box 8 7849 SEQ ID NO: 21 SLC25A5 solutecarrier family 25 (mitochondrial carrier; adenine 292 nucleotidetranslocator), member 5 hsa-mir-1244 SLC5A12 solute carrier family 5(sodium/glucose cotransporter), 159963 member 12 hsa-mir-320a SLCO1A2solute carrier organic anion transporter family, member 6579 1A2

Owing to the role of microRNA in post-transcriptional gene regulation,the microRNA of the invention are involved in the regulation of geneslisted in tables A, B, C, D and E and subsequently in the associatedpregnancy outcome.

An object of the invention relates to a method for selecting an oocytethat will produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy, comprising a step of measuringin a cumulus cell surrounding said oocyte the expression level of atleast 5 microRNA selected from the group consisting of hsa-mir-103-1,hsa-mir-103-2, hsa-mir-1826, hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3,hsa-let-7b, hsa-let-7c, hsa-let-7f, hsa-mir-1244, hsa-mir-182,hsa-mir-21, hsa-mir-30a, hsa-mir-30d, hsa-mir-320a, hsa-mir-508,hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-1974,hsa-mir-146b, hsa-mir-886, hsa-mir-210, hsa-mir-1979, hsa-mir-125a, SEQID NO: 6, SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10. SEQID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15,SEQ ID NO: 16, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO:20 and SEQ ID NO: 21.

The present invention also relates to a method for selecting an embryowith a high implantation rate leading to pregnancy, comprising a step ofmeasuring in a cumulus cell surrounding said embryo the expression levelof at least 5 microRNA selected from the group consisting ofhsa-mir-103-1, hsa-mir-103-2, hsa-mir-1826, hsa-let-7a-1, hsa-let-7a-2,hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7f, hsa-mir-1244,hsa-mir-182, hsa-mir-21, hsa-mir-30a, hsa-mir-30d, hsa-mir-320a,hsa-mir-508, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-16-1, hsa-mir-16-2,hsa-mir-1974, hsa-mir-146b, hsa-mir-886, hsa-mir-210, hsa-mir-1979,hsa-mir-125a, SEQ ID NO: 6, SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9,SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO:14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ ID NO: 17, SEQ ID NO: 18, SEQ IDNO: 19, SEQ ID NO: 20 and SEQ ID NO: 21.

Typically, the expression level of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 or 42 microRNA may bemeasured.

In one embodiment, the redundancy is avoided by selecting no more thanone microRNA for each gene listed in table A, B, C, D and E.

In one embodiment, the redundancy is avoided by selecting only one ortwo microRNA by group A, B, C, D or E.

In another embodiment, the methods of the present invention comprises astep of measuring the expression level of at least 5 microRNA selectedfrom the consisting of hsa-mir-103-1, hsa-mir-103-2, hsa-mir-1826,hsa-let-7b, hsa-let-7c, hsa-mir-1244, hsa-mir-182, hsa-mir-21,hsa-mir-30a, hsa-mir-30d, hsa-mir-320a, hsa-mir-508, hsa-mir-92a-1,hsa-mir-92a-2, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-1974, hsa-mir-146b,hsa-mir-886, hsa-mir-210, hsa-mir-1979, hsa-mir-125a, SEQ ID NO: 6, SEQID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16.SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20 and SEQ IDNO: 21.

In another embodiment, the methods of the present invention comprise astep of measuring the expression level of at least 5 microRNA selectedfrom the group consisting of hsa-mir-508, hsa-mir-16-1, hsa-mir-16-2,hsa-mir-103-1, hsa-mir-103-2, hsa-mir-1974, hsa-mir-1826, SEQ ID NO: 7,SEQ ID NO: 8 and SEQ ID NO: 12.

Indeed, the inventors have shown that these microRNAs present the moresignificant difference in level of expression between competent oocytesor embryos and oocytes or embryos that are not competent.

In another embodiment, the methods of the present invention comprise astep of measuring the expression level of at least 5 microRNA selectedfrom the group consisting of hsa-mir-508, hsa-mir-16-1, hsa-mir-16-2,hsa-mir-103-1, hsa-mir-103-2, hsa-mir-1974, hsa-mir-1826, SEQ ID NO: 7,SEQ ID NO: 8, SEQ ID NO: 12, hsa-let-7b, hsa-let-7c, hsa-mir-182,hsa-mir-21, hsa-mir-30a and hsa-mir-30d.

Indeed, the inventors have shown that these miRNAs interact with genesparticularly relevant in the prediction of the competence of oocytes andembryos such as IGF1R and NFIB.

The present invention also relates to a method for selecting an oocytethat will produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy or an embryo with a highimplantation rate leading to pregnancy, comprising a step of measuringin a bodily fluid the expression level of at least 5 microRNA selectedfrom the group consisting of hsa-mir-103-1, hsa-mir-103-2, hsa-mir-1826,hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c,hsa-let-7f, hsa-mir-1244, hsa-mir-182, hsa-mir-21, hsa-mir-30a,hsa-mir-30d, hsa-mir-320a, hsa-mir-508, hsa-mir-92a-1, hsa-mir-92a-2,hsa-mir-16-1, hsa-mir-16-2, hsa-mir-1974, hsa-mir-146b, hsa-mir-886,hsa-mir-210, hsa-mir-1979, hsa-mir-125a, SEQ ID NO: 6, SEQ ID NO: 7, SEQID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ ID NO: 17,SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO: 21, SEQ ID NO:22, SEQ ID NO: 23, SEQ ID NO:24 and SEQ ID NO: 25.

It is well-known that microRNAs can circulate in bodily fluid.

Thus, Zheng et al. (2011) have shown that hsa-mir-182 is present inplasma and saliva.

Furthermore, Huang et al. (2009), Lawrie et al. (2008), Asaga et al.(2011) and Henegan et al. (2010) have respectively found thathsa-mir-320a, hsa-mir-210, hsa-mir-21 and hsa-let-7a-1 are circulatingmiRNAs.

Gunel et al. (2011) have shown that increased hsa-mir-210 levels inmaternal serum can be used in noninvasive prenatal diagnosis. Theexpression level of microRNA may be measured in blood, urine, saliva orfollicular liquid sample.

The blood sample to be used in the methods according to the inventionmay be a whole blood sample, a serum sample, or a plasma sample.

The bodily fluid may be taken from the oocyte donor or the host of theembryo.

In one embodiment, the methods of the present invention comprise a stepof measuring the expression level of at least 5 microRNAs selected fromthe group consisting of hsa-mir-182, hsa-mir-320a, hsa-mir-210,hsa-mir-21, hsa-let-7a-1.

The methods of the invention may further comprise a step consisting ofcomparing the expression level of the microRNA in the sample with acontrol, wherein detecting differential in the expression level of themicroRNA between the sample and the control is indicative whether theoocyte produces, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy or the embryo is with a highimplantation rate leading to pregnancy.

The control for oocyte may consist in sample comprising cumulus cellsassociated with a competent oocyte or a non competent oocyte or insample comprising cumulus cells associated with an embryo that givesrise to a viable foetus.

Preferably, the control consists in sample comprising cumulus cellsassociated with a competent oocyte.

The control for embryo may consist in sample comprising cumulus cellsassociated with an embryo that gives rise to a viable foetus or in asample comprising cumulus cells associated with an embryo that does notgive rise to a viable foetus.

Preferably, the control consists in sample comprising cumulus cellsassociated with an embryo that gives rise to a viable foetus.

The methods of the invention may further comprise a step of measuring ina cumulus cell surrounding said oocyte or said embryo the expressionlevel of one or more genes selected from the group consisting of ATF3,SIAT6, PRKACA, PLA2G5, GPC6, G0S2, RBMS1, NFIC, SLC40A1 and WNT6.

Typically, the method of the invention may comprise a further step ofmeasuring the expression level of 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 genesselected from the group consisting of ATF3, SIAT6, PRKACA, PLA2G5, GPC6,G0S2, RBMS1, NFIC, SLC40A1 and WNT6.

Indeed, as described in WO2010/18991, the inventors have identified aset of 45 genes whose measuring the level of expression in cumulus cellsis predictive of pregnancy outcome.

After complementary studies, the inventors have determined a subset of10 genes comprising ATF3, SIAT6, PRKACA, PLA2G5, GPC6, G0S2, RBMS1.NFIC. SLC40A1 and WNT6. This subset appeared to be one of the mostreliable set to select an oocyte that will produce, upon fertilization,a viable embryo with a high implantation rate leading to pregnancy or anembryo with a high implantation rate leading to pregnancy in regard ofdifferent clinical conditions as shown in Table F.

TABLE F Clinical conditions predicted by the set of predictive genesGene Symbol Gene name Gene ID B: genes whose overexpressions arepredictive of embryos unable to implant PLA2G5 phospholipase A2, group V5322 GPC6 glypican 6 10082 ATF3 activating transcription factor 3 467SIAT6 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 6487 PRKACAprotein kinase, cAMP-dependent, catalytic, alpha 5566 SLC40A1 solutecarrier family 40 (iron-regulated transporter), member 1 30061 WNT6wingless-type MMTV integration site family, member 6 7475 C: genes whoseoverexpressions are predictive of early embryo arrest NFIC nuclearfactor I/C (CCAAT-binding transcription factor) 4782 RBMS1 RNA bindingmotif, single stranded interacting protein 1 5937 G0S2 G0/G1 switch 250486

Preferably, genes and microRNA of the present invention aren't measuredin a redundant way that is to say that if a microRNA is selected, thegene with which it interacts won't be selected.

In one embodiment, to avoid any redundancy, the method of the inventionmay comprise a further step of measuring the expression level of 1 or 2genes selected from group B and 1 or 2 genes selected from group C.

Alternatively, said one or more genes may be selected for example fromgroup B alone or group C alone.

Typically, 1, 2, 3, 4, 5, 6 or 7 genes may be selected from group B.

Typically, 1, 2 or 3 genes may be selected from group C.

The present invention also relates to a method for selecting an oocytethat will produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy or an embryo with a highimplantation rate leading to pregnancy, comprising a step of measuringin the culture medium of cumulus cell having surrounded said oocyte orsaid embryo the expression level of at least 5 microRNA selected fromthe group consisting of hsa-mir-103-1, hsa-mir-103-2, hsa-mir-1826,hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c,hsa-let-7f, hsa-mir-1244, hsa-mir-182, hsa-mir-21, hsa-mir-30a,hsa-mir-30d, hsa-mir-320a, hsa-mir-508, hsa-mir-92a-1, hsa-mir-92a-2,hsa-mir-16-1, hsa-mir-16-2, hsa-mir-1974, hsa-mir-146b, hsa-mir-886,hsa-mir-210, hsa-mir-1979, hsa-mir-125a, SEQ ID NO: 6, SEQ ID NO: 7, SEQID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ ID NO: 17,SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20 and SEQ ID NO: 21.

The methods of the invention are particularly suitable for assessing theefficacy of an in vitro fertilization treatment. Accordingly theinvention also relates to a method for assessing the efficacy of acontrolled ovarian hyperstimulation (COS) protocol in a female subjectcomprising:

i) providing from said female subject at least one oocyte with itscumulus cells;

ii) determining by a method of the invention whether said oocyte is anoocyte that will produce, upon fertilization, a viable embryo with ahigh implantation rate leading to pregnancy e.

Then after such a method, the embryologist may select the oocytes thatwill produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy and in vitro fertilized themthrough a classical in vitro fertilization (cIVF) protocol or under anintracytoplasmic sperm injection (ICSI) protocol.

A further object of the invention relates to a method for monitoring theefficacy of a controlled ovarian hyperstimulation (COS) protocolcomprising:

i) isolating from said woman at least one oocyte with its cumulus cellsunder natural, modified or stimulated cycles;

ii) determining by a method of the invention whether said oocyte is anoocyte that will produce, upon fertilization, a viable embryo with ahigh implantation rate leading to pregnancy;

iii) and monitoring the efficacy of COS treatment based on whether itresults in an oocyte that will produce, upon fertilization, a viableembryo with a high implantation rate leading to pregnancy.

The COS treatment may be based on at least one active ingredientselected from the group consisting of GnRH agonists or antagonistsassociated with recombinant FSH or hMG.

The present invention also relates to a method for determining whetheran embryo is an embryo with a high implantation rate leading topregnancy, comprising:

i) providing an oocyte with its cumulus cells

ii) in vitro fertilizing said oocyte

iii) determining whether the embryo that results from step ii) has ahigh implantation rate leading to pregnancy by determining by a methodof the invention whether said oocyte of step i), is an oocyte that willproduce, upon fertilization, a viable embryo with a high implantationrate leading to pregnancy.

The methods of the invention are particularly suitable for enhancing thepregnancy outcome of a female. Accordingly the invention also relates toa method for enhancing the pregnancy outcome of a female comprising:

i) selecting an embryo with a high implantation rate leading topregnancy by performing a method of the invention

iii) implanting the embryo selected at step i) in the uterus of saidfemale.

The method as above described will thus help embryologist to avoid thetransfer in uterus of embryos with a poor potential for pregnancy outcome.

The method as above described is also particularly suitable for avoidingmultiple pregnancies by selecting the competent embryo able to lead toan implantation and a pregnancy.

The invention also relates to a kit for performing the methods as abovedescribed, wherein said kit comprises means for measuring the expressionlevel of the microRNA of Table I that are indicative whether the oocytethat will produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy or the embryo with a highimplantation rate leading to pregnancy.

It is to note that the methods of the invention leads to an independencefrom morphological considerations of the embryo. Two embryos may havethe same morphological aspects but by a method of the invention maypresent a different implantation rate leading to pregnancy.

The methods of the invention are applicable preferably to women but maybe applicable to other mammals (e.g., primates, dogs, cats, pigs, cows .. . ).

The present invention also relates to an isolated nucleic acid moleculehaving the nucleotide sequence as set forth in SEQ ID NO: 6, SEQ ID NO:7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO:12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ IDNO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO: 21, SEQID NO: 22, SEQ ID NO: 23. SEQ ID NO:24 and SEQ ID NO: 25.

In one embodiment, the nucleic acid molecule according to the inventionis used in diagnosis of infertility.

The present invention also relates to a method for the diagnosis ofinfertility comprising the step of measuring the expression level of atleast 5 microRNA selected from the group consisting of SEQ ID NO: 6, SEQID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16,SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20, SEQ ID NO:21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO:24 and SEQ ID NO: 25.

The invention will be further illustrated by the following figures andexamples. However, these examples and figures should not be interpretedin any way as limiting the scope of the present invention.

FIGS. 1 to 4 are diagrams illustrating molecular pathways and functionalgroupings between microRNA and biomarkers genes.

These diagrams were done by using the Ingenuity Pathways Analysis (IPA)system (Ingenuity Systems, Redwood City, Calif., USA) thank to publishedliterature related to above mentioned miRNA and genes. Above mentionedmiRNA and genes were uploaded into IPA and overlaid onto a globalmolecular network developed from information contained in theapplication. Networks of these miRNA and genes were generated by IPAbased on their connectivity (FIG. 1 to 4). The biological relationshipbetween two nodes is represented as an edge (line). All lines aresupported by at least one reference in literature, textbook, or fromcanonical information stored in the Ingenuity Pathways knowledgedatabase.

EXAMPLE

Samples

Cumulus cells and mature MII oocytes were collected from patientsconsulting for conventional IVF (cIVF) or for ICSI (male infertility).Cumulus cells were removed from a mature oocyte (MII). CCs werepartially separated mechanically from the corresponding oocyte aspreviously described (Assou et al., 2008). Unfertilized MII oocytes werecollected 21 or 44 h after insemination or after microinjection by ICSI.Cumulus cells and oocytes were frozen at −80° C. in RLT buffer (RNeasyKit, Qiagen, Valencia, Calif.) before miRNA extraction.

Methods for Determining the Expression Level of the microRNA:

Determination of the expression level of the microRNA can be performedby a variety of techniques known in the art.

Preferably, small RNA from cumulus cells and mature MII oocyte sampleswas extracted after storage of samples at −80° C. in RLT RNA extractionbuffer supplemented with 1 μM of 2-ß-mercaptoethanol (M-3148, Sigma) asdescribed in the manufacturer's protocol (miRNeasy mini Kit, Qiagen,Valencia, Calif.).

The 5′ RNA adapter (5′-GUUCAGAGUUCUACAGUCCGACGAUC-3′ (SEQ ID NO: 1)) wasligated to the RNA pool with T4 RNA ligase (Ambion) in the presence ofRNase Out (Invitrogen) overnight at 25° C. The ligation reaction wasstopped by the addition of 2× formamide loading dye. The ligated RNA wassize fractionated on a 15% TBE urea polyacrylamide gel and a 40-60 basepair fraction was excised. RNA was eluted from the polyacrylamide gelslice in 600 μL of 0.3 M NaCl overnight at 4° C. The RNA was eluted fromthe gel and precipitated as described above followed by resuspension inDEPC-treated water.

The 3′ RNA adapter ((SEQ ID NO: 2) 5′-pUCGUAUGCCGUCUUCUGCUUGidT-3′; p,phosphate; idT, inverted deoxythymidine) was subsequently ligated to theprecipitated RNA with T4 RNA ligase (Ambion) in the presence of RNaseOut (Invitrogen) overnight at 25° C. The ligation reaction was stoppedby the addition of 10 μL of 2× formamide loading dye. Ligated RNA wassize fractionated on a 10% TBE urea polyacrylamide gel and the 60-100base pair fraction was excised. The RNA was eluted from thepolyacrylamide gel and precipitated from the gel as described above andresuspended in 5.0 μL of DEPC water. The RNA was converted tosingle-stranded cDNA using Superscript II reverse transcriptase(Invitrogen) and Illumina's small RNA RT-Primer(5′-CAAGCAGAAGACGGCATACGA-3′ (SEQ ID NO: 3)) following themanufacturer's instructions. The resulting cDNA was PCR-amplified withHotstart Phusion DNA Polymerase (NEB) in 15 cycles using illumina'ssmall RNA primer set (5′-CAAGCAGAAGACG GCATACGA-3′ (SEQ ID NO: 4);5′-AATGATACGGCGACCACCGA-3′ (SEQ ID NO: 5)).

PCR products were purified on a 12% TBE urea polyacrylamide gel andeluted into elution buffer (5:1, LoTE: 7.5 M ammonium acetate) overnightat 4° C. The resulting gel slurry was passed through a Spin-X filter(Corning) and precipitated by the addition of 1100 μL of ethanol, 133 μLof 7.5 M ammonium acetate and 3 μL of mussel glycogen (20 mg/mL;Invitrogen). After washing with 75% ethanol, the pellet was allowed toair dry at 25° C. and dissolved in EB buffer (Qiagen) by incubation at4° C. for 10 min. The purified PCR products were quantified on theAgilent DNA 1000 chip and diluted to 10 nM for sequencing on theIllumina 1G.

Small RNA Annotation

We trimmed all reads at 30nt to reduce the number of unique sequences.We counted the occurrences of each unique sequence read and used onlythe unique sequences for further analysis. All sequence tags are mappedonto the human reference genome using the SOAP program following themirTools web server procedure (Zhu E L, Zhao F Q, et al., NAR 2010).Subsequently, these unique sequence tags are also aligned againstmiRBase (Griffiths-Jones, S et al. NAR 2008), Rfam (Griffiths-Jones, Set al. NAR 2005), repeat database produced by RepeatMasker(Tarailo-Graovac, M. and Chen, N. (2009) Curr. Protoc. Bioinform.,Chapter 4, Unit 4. 108.) and the coding genes of the reference genome.In this way, the unique sequence tags can be classified into thefollowing categories: known microRNA, degradation fragments ofnon-coding RNA, genomic repeats and mRNA. In case of conflict, ahierarchy is conducted to assign the tag into a unique category, whichstarts with non-coding RNA, then known microRNA and followed by repeatassociated RNA and mRNA. Sequences that are assigned to none of theseannotations but can be mapped to the reference genome are classified as‘unclassified’.

A microRNA target prediction were done using known microRNA andTargetScan data (release 4.0) which provides predicted targets for knownmicroRNAs (http://www.targetscan.org/).

Differential Expression Detection

To compare differentially expressed microRNA between multiple samples,read count of each identified microRNA is normalized to the total numberof microRNA read counts that are matched to the reference genome in eachsample. The statistical significance (P-value) is inferred based on aBayesian method (Audic, S. and Claverie, J. M. (1997) Genome Res.),which was developed for analyzing digital gene expression profiles andcould account for the sampling variability of tags with low counts. Indefault, a specific microRNA will be deemed to be significantlydifferentially expressed when the P-value given by this method is 0.01and there is at least a 2-fold change in normalized sequence counts.

Novel microRNA Prediction

Sequences that do not fall into above annotation categories but matchedon the reference genome are used to detect candidate novel microRNAgenes. In default, 100 nucleotides of genomic sequence flanking eachside of these sequences are extracted and their RNA secondary structuresare predicted using RNAfold (Hofacker, I. L. NAR 2003). Novel microRNAsare identified by folding the flanking genomic sequence using themiRDeep program.

Methods for Determining the Expression Level of the Genes:

Determination of the expression level of genes as ATF3, SIAT6, PRKACA,PLA2G5, GPC6, G0S2, RBMS1, NFIC. SLC40A1 or WNT6 can be performed by avariety of techniques. Generally, the expression level as determined isa relative expression level. Some of these methods are well described inWO2010/118991.

Results

Analysis of level of expression of microRNA in CCs has permitted toidentify candidate microRNA biomarkers.

Known microRNA

Known microRNA from CCs group are listed in Table G.

TABLE G Set of known predicitve microRNA: microRNAs Length startendlocation e_value hsa-mir-1974 26 1 . . . 26 45 . . . 70 2.00E−10hsa-let-7b 18 1 . . . 18  6 . . . 23 7.00E−06 hsa-mir-1244 22 1 . . . 2257 . . . 78 4.00E−08 hsa-mir-30d 24 1 . . . 24  6 . . . 29 3.00E−09hsa-mir-182 19 1 . . . 19 28 . . . 46 2.00E−06 hsa-mir-146b 24 1 . . .24  9 . . . 32 3.00E−09 hsa-let-7c 19 1 . . . 19 11 . . . 29 2.00E−06hsa-mir-92a-2 22 1 . . . 22 48 . . . 69 4.00E−08 hsa-mir-92a-1 22 1 . .. 22 48 . . . 69 4.00E−08 hsa-mir-886 25 1 . . . 25 15 . . . 39 7.00E−10hsa-mir-508 22 1 . . . 22 61 . . . 82 4.00E−08 hsa-mir-320a 18 1 . . .18 52 . . . 69 7.00E−06 hsa-mir-30a 24 1 . . . 24  6 . . . 29 3.00E−09hsa-mir-210 19 1 . . . 19 66 . . . 84 2.00E−06 hsa-mir-21 22 1 . . . 22 9 . . . 30 4.00E−08 hsa-mir-1979 24 1 . . . 24  6 . . . 29 3.00E−09hsa-mir-1826 24 1 . . . 24  1 . . . 24 3.00E−09 hsa-mir-16-2 19 1 . . .19 10 . . . 28 2.00E−06 hsa-mir-16-1 19 1 . . . 19 14 . . . 32 2.00E−06hsa-mir-125a 24 1 . . . 24 15 . . . 38 3.00E−09 hsa-mir-103-2 22 1 . . .22 48 . . . 69 4.00E−08 hsa-mir-103-1 22 1 . . . 22 48 . . . 69 4.00E−08hsa-let-7a-3 20 1 . . . 20  4 . . . 23 5.00E−07 hsa-let-7a-2 20 1 . . .20  5 . . . 24 5.00E−07 hsa-let-7a-1 20 1 . . . 20  6 . . . 25 5.00E−07hsa-let-7f 22 1 . . . 22  7 . . . 28 4.00E−07

The interaction between these microRNA and mRNA from gene identified tobe potential biomarkers by the inventors (WO2010/118991, Assou et al.,2008; Assou et al. 2010) was studied by using TargetScan.

TargetScan predicts biological targets of miRNAs by searching for thepresence of conserved 8mer and 7mer sites that match the seed region ofeach miRNA (Lewis et al., 2005). As an option, nonconserved sites arealso predicted. Also identified are sites with mismatches in the seedregion that are compensated by conserved 3′ pairing (Friedman et al.,2009). In mammals, predictions are ranked based on the predictedefficacy of targeting as calculated using the context scores of thesites (Grimson et al., 2007). TargetScanHuman considers matches toannotated human UTRs and their orthologs, as defined by UCSCwhole-genome alignments. Conserved targeting has also been detectedwithin open reading frames (ORFs).

Other database as MiRDB (http://mirdb.org/cgi-bin/search.cgi) andIngenuity (IPA) have also been used.

Some of these interactions are illustrated in FIGS. 1 to 4.

New microRNA Biomarkers

The inventors have identified novel microRNA among the unclassifiedsequences in their libraries. After annotation, 5,165 of the microRNAsequences in the CCs library remained unclassified because they derivedfrom unannotated regions of the human genome. Novel microRNA wereidentified. These microRNA regulate the expression of 7 gene biomarkerssuch as: (PCK1 (3 microRNA: SEQ ID NO: 15; SEQ ID NO: 16; SEQ ID NO:17); GPC6 (2 microRNA: SEQ ID NO: 7, SEQ ID NO: 8); SOX4 (2 microRNA:SEQ ID NO: 13, SEQ ID NO: 14); SLC25A5 (1 microRNA: SEQ ID NO: 21); NFIC(1 microRNA: SEQ ID NO: 12; SEQ ID NO: 22); IGF1R (1 microRNA: SEQ IDNO:11); GIRK5 (1 microRNA: SEQ ID NO: 10)).

Interactions microARN and Genes Identified to be Interesting Biomarkers

The inventors have investigated the interaction between these microRNAand mRNA from genes identified to be interesting biomarkers in formerstudies (McKenzie et al., 2004; van Montfoort et al., 2008; Zhang etal., 2005; Assou et al., 2008; Hamel et al., 2008; Hamel et al., 2010;Assou et al. 2010; WO2010/118991).

MiRNA are known to be post-transcriptional regulators that bind tocomplementary sequences on target messenger RNA transcripts (mRNAs),usually resulting in translational repression or target degradation andgene silencing (Bartel et DP (2009)).

Thus, without being bound by theory, the under-expression of mostmicroRNA that interact with a gene whose overexpression is predictive ofa competent oocyte or a competent embryo is predictive of an oocyte thatwill produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy or of an embryo with a highimplantation rate leading to pregnancy.

In the same way, the under-expression of most microRNA that interactwith a gene whose overexpression is predictive of an oocyte or an embryothat is not competent is predictive of an oocyte or an embryo that isnot competent.

For example, SEQ ID NO: 23, hsa-mir-92a, SEQ ID NO: 13 and SEQ ID NO: 14interact with genes of group D. Thus, their under-expression can bepredictive of a bad quality embryo.

Conversely, the overexpression of most microRNA that interact with agene whose under-expression is predictive of a competent oocyte or acompetent embryo is predictive of an oocyte that will produce, uponfertilization, a viable embryo with a high implantation rate leading topregnancy or of an embryo with a high implantation rate leading topregnancy.

By extension, the overexpression of most miRNA that interact with a genewhose overexpression is predictive of embryo unable to implant, earlyembryo arrest or a bad quality embryo is predictive of an oocyte thatwill produce, upon fertilization, a viable embryo with a highimplantation rate leading to pregnancy or of an embryo with a highimplantation rate leading to pregnancy.

For example, overexpression of a miRNA interacting with genes of groupsB, C and D can be predictive of an oocyte that will produce, uponfertilization, a viable embryo with a high implantation rate leading topregnancy or of an embryo with a high implantation rate leading topregnancy when it is under-expressed.

CONCLUSION

CC gene and microRNA expression analysis begins to be a valuable toolfor improving embryo selection, either for fresh embryo replacement orfor freezing. According to our preliminary data, there is norelationship between the gene expression profile of CCs and the embryomorphological aspects. It is time to reconsider the notion that embryospresenting a low grade according morphological aspects are able toachieve pregnancy. Indeed, during the last decade, the availability oftechnical platforms, small RNA library sequencing and whole genomemicroarrays has rapidly generated data on the molecular mechanisms ofthe CC-oocyte complex. Today, these technologies provide potentialpredictive biomarkers as non-invasive tools for clinical applications.Finally, this concept reveals the potential of CCs microRNA to serve asmolecular biomarkers for embryo selection.

REFERENCES

Throughout this application, various references describe the state ofthe art to which this invention pertains. The disclosures of thesereferences are hereby incorporated by reference into the presentdisclosure.

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The invention claimed is:
 1. A method for selecting an oocyte that willproduce, upon fertilization, a viable embryo with a high implantationrate leading to pregnancy, and then implanting an embryo in a femaleundergoing in vitro fertilization, said method comprising the steps of:i) measuring, in a cumulus cell surrounding said oocyte, an expressionlevel of at least 5 microRNA selected from the group consisting ofhsa-mir-103-1, hsa-mir-103-2, hsa-mir-1826, hsa-let-7a-1, hsa-let-7a-2,hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7f, hsa-mir-1244,hsa-mir-182, hsa-mir-21, hsa-mir-30a, hsa-mir-30d, hsa-mir-320a,hsa-mir-508, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-16-1, hsa-mir-16-2,hsa-mir-1974, hsa-mir-146b, hsa-mir-886, hsa-mir-210, hsa-mir-1979,hsa-mir-125a, SEQ ID NO: 6, SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9,SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO:14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ ID NO: 17, SEQ ID NO: 18, SEQ IDNO: 19, SEQ ID NO: 20 and SEQ ID NO: 21; ii) comparing the expressionlevel of each of said at least 5 microRNA measured in step i) withcontrol expression levels of said at least 5 microRNA measured incumulus cells associated with competent oocytes; iii) selecting theoocyte when said at least 5 microRNA are not differentially expressedwhen compared to cumulus cells associated with competent oocytes; iv)fertilizing the oocyte selected in step iii) in vitro to generate anembryo; and v) implanting the embryo generated in step iv) in saidfemale.
 2. The method according to claim 1 wherein said at least 5microRNA are selected from the group consisting of hsa-mir-508,hsa-mir-16-1, hsa-mir-16-2, hsa-mir-103-1, hsa-mir-103-2, hsa-mir-1974,hsa-mir-1826, SEQ ID NO: 7, SEQ ID NO: 8 and SEQ ID NO:
 12. 3. Themethod according to claim 1 wherein said at least 5 microRNA areselected from the group consisting of hsa-mir-508, hsa-mir-16-1,hsa-mir-16-2, hsa-mir-103-1, has-mir-103-2, hsa-mir-1974, hsa-mir-1826,SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 12, hsa-let-7b, hsa-let-7c,hsa-mir-182, hsa-mir-21, hsa-mir-30a and hsa-mir-30d.
 4. The methodaccording to claim 1 wherein said at least 5 microRNA are selected fromthe group consisting of hsa-mir-182, hsa-mir-320a, hsa-mir-210,hsa-mir-21 and has-let-7a-1.
 5. The method according to claim 1comprising a further step of measuring in a cumulus cell surroundingsaid oocyte the expression level of one or more genes selected from thegroup consisting of ATF3, SIAT6, PRKACA, PLA2G5, GPC6, G0S2, RBMS1,NFIC, SLC40A1 and WNT6.
 6. A method for selecting an embryo with a highimplantation rate leading to pregnancy, and then implanting said embryoin a female undergoing in vitro fertilization, said method comprisingthe steps of: i) measuring, in a cumulus cell surrounding said embryo,an expression level of at least 5 microRNA selected from the groupconsisting of hsa-mir-103-1, hsa-mir-103-2, hsa-mir-1826, hsa-let-7a-1,hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7f,hsa-mir-1244, hsa-mir-182, hsa-mir-21, hsa-mir-30a, hsa-mir-30d,hsa-mir-320a, hsa-mir-508, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-16-1,hsa-mir-16-2, hsa-mir-1974, hsa-mir-146b, hsa-mir-886, hsa-mir-210,hsa-mir-1979, hsa-mir-125a, SEQ ID NO: 6, SEQ ID NO: 7, SEQ ID NO: 8,SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQ ID NO: 12, SEQ ID NO:13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, SEQ ID NO: 17, SEQ IDNO: 18, SEQ ID NO: 19, SEQ ID NO: 20 and SEQ ID NO: 21; ii) comparingthe expression level of each of said at least 5 microRNA measured instep i) with control expression levels of said at least 5 microRNAmeasured in cumulus cells associated with competent embryos; iii)selecting the embryo when said at least 5 microRNA are notdifferentially expressed when compared to cumulus cells associated withcompetent embryos; and iv) implanting the embryo selected in step iii)in said female.
 7. The method according to claim 6 wherein said at least5 microRNA are selected from the group consisting of hsa-mir-508,hsa-mir-16-1, hsa-mir-16-2, hsa-mir-103-1, has-mir-103-2, hsa-mir-1974,hsa-mir-1826, SEQ ID NO: 7, SEQ ID NO: 8 and SEQ ID NO:
 12. 8. Themethod according to claim 6 wherein said at least 5 microRNA areselected from the group consisting of hsa-mir-508, hsa-mir-16-1,hsa-mir-16-2, hsa-mir-103-1, has-mir-103-2, hsa-mir-1974, hsa-mir-1826,SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 12, hsa-let-7b, hsa-let-7c,hsa-mir-182, hsa-mir-21, hsa-mir-30a and hsa-mir-30d.
 9. The methodaccording to claim 6 wherein said at least 5 microRNA are selected fromthe group consisting of hsa-mir-182, hsa-mir-320a, hsa-mir-210,hsa-mir-21 and has-let-7a-1.
 10. The method according to claim 6comprising a further step of measuring in a cumulus cell surroundingsaid embryo the expression level of one or more genes selected from thegroup consisting of ATF3, SIAT6, PRKACA, PLA2G5, GPC6, G0S2, RBMS1,NFIC, SLC40A1 and WNT6.
 11. A method for selecting an oocyte that willproduce, upon fertilization, a viable embryo with a high implantationrate leading to pregnancy or an embryo with a high implantation rateleading to pregnancy, and then implanting an embryo in a femaleundergoing in vitro fertilization, said method comprising the steps of:i) measuring, in the culture medium of cumulus cell having surroundedsaid oocyte or said embryo, an expression level of at least 5 microRNAselected from the group consisting of hsa-mir-103-1, hsa-mir-103-2,hsa-mir-1826, hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b,hsa-let-7c, hsa-let-7f, hsa-mir-1244, hsa-mir-182, hsa-mir-21,hsa-mir-30a, hsa-mir-30d, hsa-mir-320a, hsa-mir-508, hsa-mir-92a-1,hsa-mir-92a-2, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-1974, hsa-mir-146b,hsa-mir-886, hsa-mir-210, hsa-mir-1979, hsa-mir-125a, SEQ ID NO: 6, SEQID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQ ID NO: 11, SEQID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16,SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO: 20 and SEQ IDNO: 21; ii) comparing the expression level of each of said at least 5microRNA measured in step i) with control expression levels of said atleast 5 microRNA measured in cumulus cells associated with competentoocytes or embryos; iii) selecting the oocyte or embryo when said atleast 5 microRNA are not differentially expressed when compared tocumulus cells associated with competent oocytes or embryos; and iv)implanting the embryo selected in step iii) in said female orfertilizing the oocyte selected in step iii) in vitro to generate anembryo and then implanting the embryo thereby generated in said female.12. A method for selecting an oocyte that will produce, uponfertilization, a viable embryo with a high implantation rate leading topregnancy or an embryo with a high implantation rate leading topregnancy, and then implanting an embryo in a female undergoing in vitrofertilization, said method comprising the steps of: i) measuring, in abodily fluid sample obtained from said female, the expression level ofat least 5 microRNA selected from the group consisting of hsa-mir-103-1,hsa-mir-103-2, hsa-mir-1826, hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3,hsa-let-7b, hsa-let-7c, hsa-let-7f, hsa-mir-1244, hsa-mir-182,hsa-mir-21, hsa-mir-30a, hsa-mir-30d, hsa-mir-320a, hsa-mir-508,hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-1974,hsa-mir-146b, hsa-mir-886, hsa-mir-210, hsa-mir-1979, hsa-mir-125a, SEQID NO: 6, SEQ ID NO: 7, SEQ ID NO: 8, SEQ ID NO: 9, SEQ ID NO: 10, SEQID NO: 11, SEQ ID NO: 12, SEQ ID NO: 13, SEQ ID NO: 14, SEQ ID NO: 15,SEQ ID NO: 16, SEQ ID NO: 17, SEQ ID NO: 18, SEQ ID NO: 19, SEQ ID NO:20, SEQ ID NO: 21, SEQ ID NO: 22, SEQ ID NO: 23, SEQ ID NO:24 and SEQ IDNO: 25; ii) comparing the expression level of each of said at least 5microRNA measured in step i) with control expression levels of said atleast 5 microRNA measured in cumulus cells associated with competentoocytes or embryos; iii) selecting the oocyte or embryo when said atleast 5 microRNA are not differentially expressed when compared tocumulus cells associated with competent oocytes or embryos; and iv)implanting the embryo selected in step iii) in said female orfertilizing the oocyte selected in step iii) in vitro to generate anembryo and then implanting the embryo thereby generated in said female.